BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026E06LP1|AL428561
(575 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1324 976 0.0
>3x_Contig1324
Length = 5803
Score = 976 bits (478), Expect = 0.0
Identities = 538/574 (93%)
Strand = Plus / Plus
Query: 1 atcctgtaagtaagtcccaacagtggcagcgacaagaaaactttccacccagcgattttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2349 atcctgtaagtaagtcccaacagtggcagcgacaagaaaactttccacccagcgatttgg 2408
Query: 61 aattgtgcctccttcaagaagaaktwatccaagcataagtwaattataggtaacawatkt 120
||| ||||||||||||||||||| | |||||||||||||| ||| |||||||||| || |
Sbjct: 2409 aatggtgcctccttcaagaagaagtaatccaagcataagtaaatgataggtaacaaatgt 2468
Query: 121 atcgctatwtcgacatgcattggtaatggagagcggctggaatcttgaacgccatgcatg 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2469 atcgctatatcgacatgcattggtaatggagagcggctggaatcttgaacgccatgcatg 2528
Query: 181 atcaakggaatkawaaatattcttagtkgccaatatattacgcatackatagtttckaka 240
||||| ||||| | ||||||||||||| |||||||||| |||||||| |||||||| | |
Sbjct: 2529 atcaagggaatgaaaaatattcttagtggccaatatatgacgcatacgatagtttcgaga 2588
Query: 241 cattttkctattkgaaacgtaaattctcttgaccagaagtktagggttcccttwttkcca 300
||| || ||||| ||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 2589 catgttgctattggaaacgtaaattctcttgaccagaagtgtagggttcccttattgcca 2648
Query: 301 agcaatttgtttacaktattcagggcaccatttacaatttttacaacagcagagatatta 360
||||||| ||||||| |||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 2649 agcaattggtttacagtattcagggcaccattgacaattgtaacaacagcagagatatta 2708
Query: 361 ktkagaaactgctttttaccagcagttgccaakttacttggcaacttgatctkagtacat 420
| ||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 2709 gtgagaaactgcttgtgaccagcagttgccaagttacttggcaacttgatctgagtacat 2768
Query: 421 tggatcaacccataggtagttgttaaaacacaggccaaacttaacaaaagaacgtatccg 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2769 tggatcaacccataggtagttgtaaaaacacaggccaaacttaacaaaagaacgtatccg 2828
Query: 481 ttacgggtcattttkggggtgaagaggatgctgaattaaagaaatgcagtttaaacctat 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2829 ttacgggtcattttgggggtgaagaggatgctgaattaaagaaatgcagtttaaacctat 2888
Query: 541 tgatctctgaactgaatgaagatctttattgata 574
||||||||||||||||||||||||||||||||||
Sbjct: 2889 tgatctctgaactgaatgaagatctttattgata 2922
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.717 1.34
Gapped
Lambda K H
1.41 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2871
Number of Sequences: 1807
Number of extensions: 2871
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 575
length of database: 10,358,551
effective HSP length: 16
effective length of query: 559
effective length of database: 10,329,639
effective search space: 5774268201
effective search space used: 5774268201
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.6 bits)
S1: 12 (25.0 bits)
S2: 49 (100.5 bits)